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Publications for: David S. Thompson
Book Chapter
Zhang, L., Laramee, R., Thompson, D., Sescu, A., & Chen, G. (2017). Compute and Visualize Discontinuity Among Neighboring Integral Curves of 2D Vector Fields. Topological Methods in Data Analysis and Visualization IV: Theory, Algorithms, and Applications. Springer. ISBN 978-3-319-44682-0, 187-204.

Burgreen, GW, Soni, B., Hester, R., Thompson, D., Walters, K., & Walters, K. B. (2010). DigitalLung: Application of High-Performance Computing to Biological System Simulation. Advances in Computational Biology (Advances in Experimental Medicine and Biology). New York: Springer. 680, 573-584. [Abstract] [Document Site]

Laramee, R., Chen, G., Jankun-Kelly, M., Zhang, E., & Thompson, D. (2009). Bringing Topology-Based Flow Visualization to the Application Domain. Topology-Based Methods in Visualization. Berlin: Springer. [Abstract] [Document]

Jiang, M., Machiraju, R., & Thompson, D. (2005). Detection and Visualization of Vortices (Invited). In C. Johnson and C. Hansen (Eds.), Visualization Handbook. Burlington, MA: Elsevier. 295-309. [Document]

Machiraju, R., Parthasarathy, S., Wilkins, J., Thompson, D., Gatlin, B., Richie, D., Choy, T., Jiang, M., Mehta, S., Coatney, M., Barr, S., & Hazzard, K. (2004). Mining Temporally-Varying Phenomena in Scientific Datasets. In H. Kargupta, A. Joshi, K. Sivakumar, and Y. Yesha (Eds.), Data Mining: Next Generation Challenges and Future Directions. Cambridge, MA: AAAI Press/The MIT Press. 273-290. [Abstract] [Document]

Kim, Y., Machiraju, R., & Thompson, D. (2004). Modeling Rough Surfaces. In G. Brunnett, B. Hamann, B. Muller, and L. Linsen (Eds.), Geometric Modeling for Scientific Visualization. Berlin: Springer Verlag. 123-138. [Abstract] [Document]

Nakshatrala, B., Thompson, D., & Machiraju, R. (2003). Ranked Representation of Vector Fields. In F. Post, G. Neilsen, and G.-P. Bonneau (Eds.), Data Visualization: The State of the Art. New York: Kluwer Academic Publishers. 301-313. [Abstract] [Document]

Machiraju, R., Fowler, J. E., Thompson, D., Schroeder, W., & Soni, B. (2001). EVITA - Efficient Visualization and Interrogation of Tera-Scale Data. In R. L. Grossman, C. Kamath, P. Kegelmeyer, V. Kumar, and R.R. Namburu (Eds.), Data Mining for Scientific and Engineering Applications. New York: Kluwer Academic Publishers. 257-279. [Abstract] [Document]

Peer-Reviewed Journals
Tong, X., Thompson, D., Arnoldus, Q., Collins, E. M., & Luke, E. (2017). Three-Dimensional Surface Evolution and Mesh Deformation for Aircraft Icing Applications. Journal of Aircraft. AIAA. 54(3), 1047-1063. DOI:10.2514/1.C033949. [Abstract]

Zhang, L., Laramee, R., Thompson, D., Sescu, A., & Chen, G. (2016). An Integral Curve Attribute Based Flow Segmentation. Journal of Visualization. 19(3), 423-436. DOI:10.1007/s12650-015-0336-4. [Document Site]

Wang, X., Remotigue, M., Arnoldus, Q., Janus, M., Luke, E., Thompson, D., Weed, R., & Bessette, G. (2016). High-fidelity Simulations of Blast Loadings in Urban Environments Using an Overset Meshing Strategy. In Alexey Podiaskin. Irina Krasovskaya (Eds.), Shock Waves. The International Shock Wave Institute. July 2016, 1-14. DOI:10.1007/s00193-016-0680-x. [Document]

Strobl, T., Storm, S., Thompson, D., Hornung, M., & Thielecke, F. (2015). Feasibility Study of a Hybrid Ice Protection System. AIAA Journal of Aircraft. 52(6), 2064-2076. DOI:10.2514/1.C033161.

Blake, J., Thompson, D., Raps, D., & Strobl, T. (2015). Modeling the Freezing of Supercooled Water Droplets Impacting a Cooled Substrate. AIAA Journal. 53(7), 1725-1739. DOI:10.2514/1.J053391. [Abstract]

Sescu, A., & Thompson, D. (2015). On the Excitation of Gortler Vortices by Distributed Roughness Elements. Theoretical and Computational Fluids Dynamics. Springer. 29, 67-92. DOI:10.2514/1.J053391.

Alam, M. F., Thompson, D., & Walters, K. (2015). Hybrid Reynolds-Averaged Navier–Stokes/Large-Eddy Simulation Models for Flow Around an Iced Wing. AIAA Journal of Aircraft. 52(1), 244-256. DOI:10.2514/1.C032678. [Abstract]

Walters, K., Burgreen, GW, Hester, R. L., Thompson, D., Pruett, W. A., & Wang, X. (2014). Cyclic Breathing Simulations in Large-Scale Models of the Lung Airway From the Oronasal Opening to the Terminal Bronchioles. ASME Journal of Fluids Engineering. 136(10), 1-10. DOI:10.1115/1.4027485. [Abstract] [Document] [Document Site]

Zhang, L., Deng, Q., Machiraju, R., Rangarajan, A., Thompson, D., Walters, K., & Shen, H. (2014). Boosting Techniques for Physics-Based Vortex Detection. Computer Graphics Forum. 33(1), 282-293. DOI:10.1111/cgf.12275. [Abstract]

Walters, K., Bhushan, S., Alam, M. F., & Thompson, D. (2013). Investigation of a Dynamic Hybrid RANS/LES Modelling Methodology for Finite-Volume CFD Simulations. Flow, Turbulence and Combustion. 91(3), 643-667. DOI:10.1007/s10494-013-9481-9. [Abstract]

Soni, B., & Thompson, D. (2012). Effects of Temporally-Varying Inlet Conditions on Flow and Particle Deposition in the Small Bronchial Tubes. International Journal for Numerical Methods in Biomedical Engineering. 28(9), 915-936. DOI:10.1002/cnm.2472. [Abstract]

Walters, K., Burgreen, GW, Lavallee, D. M., Thompson, D., & Hester, R. L. (2011). Efficient, Physiologically Realistic Lung Airflow Simulations. IEEE Transactions on Biomedical Engineering Letters: Special Issue on Multi-Scale Modeling and Analysis for Computational Biology and Medicine. 58(10), 3016-3019. DOI:10.1109/TBME.2011.2161868. [Abstract] [Document]

Kasmai, N., Thompson, D., Luke, E., Jankun-Kelly, M., & Machiraju, R. (2011). Feature-Based Adaptive Mesh Refinement for Wingtip Vortices. International Journal for Numerical Methods in Fluids. 66(10), 1274-1294. DOI:10.1002/fld.2312. [Abstract] [Document]

Ito, Y., Shih, A., Koomullil, R., Kasmai, N., Jankun-Kelly, M., & Thompson, D. (2009). Solution Adaptive Mesh Generation Using Feature-Aligned Embedded Surface Meshes. AIAA Journal. Washington, DC: AIAA. 47(8), 1879-1888. DOI:10.2514/1.39378. [Abstract]

Soni, B. J., Lindley, C., & Thompson, D. (2009). The Combined Effects of Non-planarity and Asymmetry on Primary and Secondary Flows in the Small Bronchial Tubes. International Journal for Numerical Methods in Fluids. New York: John Wiley and Sons, Ltd. 59(2), 117-146. DOI:10.1002/fld.1802. [Abstract] [Document]

Soni, B. J., Thompson, D., & Machiraju, R. (2008). Visualizing Particle/Flow Structure Interactions in the Small Bronchial Tubes. IEEE Trans. Vis. Comp. Graphics (Proc. Visualization/Information Visualization 2008). Washintgon, DC: IEEE. 14(6), 1412-1419. DOI:10.1109/TVCG.2008.183. [Abstract]

Chalasani, S., Senguttuvan, V., Thompson, D., & Luke, E. (2008). On the Use of General Elements in Fluid Dynamics Simulations. Communications in Numerical Methods in Engineering. New York: John Wiley and Sons. 24(6), 435-448. DOI:10.1002/cnm.1017. [Abstract] [Document]

Jankun-Kelly, M., Thompson, D., Jiang, M., & Machiraju, R. (2006). Vortex Visualization for Practical Engineering Applications. IEEE Trans. Vis. Comp. Graphics (Proc. Visualization/Information Visualization 2006). Washington, DC: IEEE. 12(5), 957-964. DOI:10.1109/TVCG.2006.201. [Abstract] [Document]

Craciun, G., Jiang, M., Thompson, D., & Machiraju, R. (2005). Spatial Domain Wavelet Design for Feature Preservation in Computational Data Sets. IEEE Transactions on Visualization and Computer Graphics. Washington, DC: IEEE. 11(2), 149-159. DOI:10.1109/TVCG.2005.35. [Abstract] [Document]

Chalasani, S., & Thompson, D. (2004). Quality Improvements in Extruded Meshes Using Topologically Adaptive Generalized Elements. Internation Journal for Numerical Methods in Engineering. New York: John Wiley and Sons, Ltd. 60(6), 1139–1159. DOI:10.1002/nme.1000. [Abstract] [Document]

Koomullil, R., Thompson, D., & Soni, B. (2003). Iced Airfoil Simulation Using Generalized Grids. In R. Spitaleri (Ed.), Applied Numerical Mathematics - Applied Numerical Computing: Grid Generation and Solution Methods for Advanced Simulation. Burlington, MA: Elsevier. 46(3), 319-330. DOI:10.1016/S0168-9274(03)00044-8. [Abstract]

Thompson, D., Machiraju, R., Jiang, M., Nair, J., Cracium, G., & Venkata, S. (2002). Physics-Based Feature Mining for Large Data Exploration. IEEE Computing in Science and Engineering. Washington, DC: IEEE. 4(4), 22-30. DOI:10.1109/MCISE.2002.1014977. [Abstract] [Document]

Thompson, D., & Soni, B. (2002). Semistructured Grid Generation in Three Dimensions Using a Parabolic Marching Scheme. AIAA Journal. Washington, DC: AIAA. 40(2), 391-393. DOI:10.2514/2.1659. [Abstract]

Soni, B., Koomullil, R., Thompson, D., & Thornburg, H. (2000). Solution Adaptive Grid Strategies Based on Point Redistribution. Computer Methods in Applied Mechanics and Engineering. Burlington, MA: Elsevier. 189(4), 1183-1204. DOI:10.1016/S0045-7825(99)00373-4. [Abstract] [Document]

Berdahl, C., & Thompson, D. (1993). Eduction of Swirling Structure Using the Velocity Gradient Tensor. AIAA Journal. Washington, DC: AIAA. 31(1), 97-103. DOI:10.2514/3.11324. [Abstract]

Thompson, D., & Matus, R. (1991). Conservation Errors and Convergence Characteristics of Iterative Space-Marching Algorithms. AIAA Journal. Washington, DC: AIAA. 29(2), 227-234. DOI:10.2514/3.59917. [Abstract]

Peer-Reviewed Conference Papers
Salunkhe, S., Bhushan, S., Thompson, D., & O'Doherty, T. (2016). Analysis and Validation of Hydrokinetic Turbine Turbulent Wake Predictions. Asian Wave and Tidal Energy Conference (AWTEC) 2016, October 10-12. Singapore.

Sescu, A., Afsar, M., & Thompson, D. (2016). Feedback Control of Gortler Vortices Using Wall Effects. Thirteenth International Conference on Flow Dynamics. Sendai, Japan.

Sescu, A., Afsar, M., & Thompson, D. (2016). Feedback Control of Gortler Vortices Using Wall Effects. 13th International Conference on Flow Dynamics, October 10-12. Sendai, Japan.

Sescu, A., Taoudi, L., Afsar, M., & Thompson, D. (2016). Control of Gortler Vortices by Means of Surface Streaks. AIAA Aviation Proceedings. Washington, DC.

Zhang, L., Laramee, R., Sescu, A., Thompson, D., & Chen, G. (2016). Flow Visualization Based on a Derived Rotation Field. Proceedings of Visualization and Data Analysis (VDA) 2016. San Francisco, CA.

Wang, X., Walters, K., Burgreen, GW, & Thompson, D. (2015). Cyclic Breathing Simulations: Pressure Outlet Boundary Conditions Coupled with Resistance and Compliance. ASME-JSME-KSME Joint Fluids Engineering Conference, Paper AJKFluids2015-26569. Seoul, Korea. DOI:10.1115/AJKFluids2015-26569. [Abstract]

Zhang, L., Laramee, R., Thompson, D., Sescu, A., & Chen, G. (2015). Vector Fields Segmentation Based on Integral Curve Attributes. Proceedings China Vis 2015, Jul 17-18. Tianjin, China.

Biswas, A., Thompson, D., He, W., Deng, Q., Chen, C. M., Shen, H. W., Machiraju, R., & Rangarajan, A. (2015). An Uncertainty-Driven Approach to Vortex Analysis Using Oracle Consensus and Spatial Proximity. IEEE Pacific Vis 2015. Hangzhou, China: IEEE. 223-230. DOI:10.1109/PACIFICVIS.2015.7156381. [Abstract]

Sescu, A., Pendyala, R., & Thompson, D. (2014). On the Growth of Gortler Vortices Excited by Distributed Roughness Elements. AIAA Aviation 2014, Paper 2014-2885. Atlanta, GA.

Tong, X., Thompson, D., Arnoldus, Q., Collins, E. M., & Luke, E. (2014). Robust Surface Evolution and Mesh Deformation for Three Dimensional Aircraft Icing Applications on a Swept GLC-305 Airfoil. AIAA Aviation 2014. Atlanta, GA: AIAA. AIAA-2014-2201.

Wang, X., Walters, K., Burgreen, GW, & Thompson, D. (2013). Traditional CFD Boundary Conditions Applied to Blood Analog Flow Through a Patient-Specific Aortic Coarctation. 2013 International Workshop on Statistical Atlases and Computational Models of the Heart,. Nagoya, Japan. [Abstract] [Document]

Morris, C. E., Mason-Jones, A., O'Doherty, D. M., Tatum, S. C., O'Doherty, T. O., & Thompson, D. (2013). Evaluation of the Swirl Characteristics of a Tidal Stream Turbine Wake. EWTEC 2013 – 10th European Wave and Tidal Energy Conference. Aalborg, Denmark. [Abstract]

Thompson, D., Tong, X., Arnoldus, Q., Collins, E. M., McLaurin, D., & Luke, E. (2013). Discrete Surface Evolution and Mesh Deformation for Aircraft Icing Applications. Proceedings of the AIAA 5th Atmospheric and Space Environments Conference. San Diego, CA. DOI:10.2514/6.2013-2544. [Abstract]

Walters, K., Burgreen, GW, Hester, R. L., Thompson, D., Lavallee, D., Pruett, W. A., & Ford-Green, J. (2012). Cyclic Breathing Simulations in Large Scale Models of the Lung Airway from the Oronasal Opening to the Terminal Bronchioles. Proceedings of the ASME International Mechanical Engineering Congress and Exposition. Houston, TX.

Walters, K., Burgreen, GW, Hester, R. L., Thompson, D., Lavallee, D., Pruett, W. A., & Ford-Green, J. (2012). Simulations of Cyclic Breathing in the Conducting Zone of the Human Lung. Proceedings of the ASME Fluids Engineering Division Summer Meeting. Rio Grande, Puerto Rico.

Walters, K., Bhushan, S., Alam, M. F., & Thompson, D. (2012). Investigation of a Dynamic Hybrid RANS/LES Modeling Methodology for Finite-Volume CFD Simulations. Proceedings of the 9th International ERCOFTAC Symposium on Engineering Turbulence Modelling and Measurements. Thessaloniki, Greece.

Alam, M. F., Walters, K., & Thompson, D. (2011). A General Hybrid RANS-LES Framework for Complex Flows. Proceedings of the ASME-JSME-KSME Joint Fluids Engineering Conference. Hamamatsu, Japan.

Kim, Y., Machiraju, R., & Thompson, D. (2006). Path-Based Control of Smoke Simulations. Proceedings of Eurographics/ACM SIGGRAPH Symposium on Computer Animation 2006. Vienna, Austria. [Abstract]

Kim, Y., Machiraju, R., & Thompson, D. (2004). Rough Interface Reconstruction Using the Level Set Method. Proceedings of IEEE Visualization 2004. Austin, TX. 251-258. DOI:10.1109/VISUAL.2004.94. [Abstract]

Non-Refereed Conference Abstracts
Patel, R., Riveros, G., & Thompson, D. (2017). Fundamentals of Load Transfer Mechanisms in Biostructures: A Complex Network Approach. Journal of the Mississippi Academy of Sciences (Proceedings of the 81st Annual Meeting of the Mississippi Academy of Sciences). Hattiesburg, MS. 62(1), 115.

Patel, R., Riveros, G., Hoover, J., Perkins, E., & Thompson, D. (2016). Early Detection of Failure Mechanisms in Resilient Bio-Structures: A Complex Network Study. SIAM Workshop on Network Science 2016, July 15-16, 2016. Boston, MA,.

Pendyala, R. K., Sescu, A., & Thompson, D. (2014). Study of the Impact of Localized Roughness Elements on Gortler Instabilities. MSU Conference on Differential Equations and Computational Simulations. Starkville, S.

Soni, B., Lindley, C., & Thompson, D. (2007). Effects of Non-planarity on Secondary Flows in the Small Bronchial Tubes (Abstract Only). Journal of the Mississippi Academy of Sciences . 71st Annual Meeting of the Mississippi Academy of Sciences, Mississippi State, MS: Mississippi Academy of Sciences. 52(1). [Abstract]

Prabhu, R., Brewer, W., Thompson, D., & Bhushan, S. (2005). Computational Study of Vortex-Vortex Interactions. The Sixth Mississippi State - UAB Conference on Differential Equations & Computational Simulations. Starkville, MS, 39759.

Non-Refereed Conference Papers
Burgreen, GW, Bhushan, S., Wang, X., Chambers, B., Blake, J., Thompson, D., & Foster, J. W. (2017). High-Fidelity Unsteady Flow Simulation Strategy for Ground Vehicle Fording and Swimming. NATO CSO STO AVT-265 Specialist Meeting. Vilnius, Lithuania. [Abstract]

Patel, R., Thompson, D., & Riveros, G. (2017). Fundamentals of Load Transfer Mechanisms in Biostructures: A Complex Network Approach. 33rd Annual Southern Biomedical Engineering Conference. Gulfport, MS.

Sescu, A., Taoudi, L., Afsar, M., & Thompson, D. (2016). Control of Gortler Vortices by Means of Staggered Surface Streaks. AIAA Aviation 2016, June 13-17, Paper 2016-3950. Washington, DC.

Blake, J., & Thompson, D. (2016). Toward Simulating a Pitch-Up Maneuver for a Small Unmanned Aerial Vehicle. AIAA Aviation 2016, June 13-17, Paper 2016-4338. Washington, DC.

Weed, R., Janus, M., Luke, E., Thompson, D., Olguin, A. T., & Ivancic, P. (2015). A Conformal, Fully-Conservative Approach for Predicting Structural Response to Blast Loading. ASCE Structures Congress 2015, Apr 23-25, 2015. Portland, OR.

Strobl, T., Adam, R., Tuschter, M., Thompson, D., & Hornung, M. (2015). Feasibility Study of a Hybrid Ice Protection System Based on Passive Removal of Residual Ice. AIAA SciTech 2015, Jan 5-9, 2015.. Kissimmee, FL: AIAA, AIAA #2015-0032.

Blake, J., Thompson, D., Raps, D., & Strobl, T. (2014). Effects of Surface Characteristics and Droplet Diameter on the Freezing of Supercooled Water Droplets Impacting a Cooled Substrate. AIAA Aviation 2014, Paper 2014-2328. Atlanta, GA.

Strobl, T., Storm, S., Thompson, D., & Hornung, M. (2014). Feasibility Study of a Hybrid Ice Protection System. AIAA Aviation 2014, Paper 2014-2060. Atlanta, GA.

Ivancic, P., Janus, M., Luke, E., Thompson, D., & Weed, R. (2014). A Conformal, Fully-Conservative Approach for Predicting Blast Effects on Ground Vehicles. NATO AVT-221/RSM-032: Design and Protection Technologies for Land and Amphibious NATO Vehicles. Copenhagen, Denmark.

Harris, R., Liever, P., Thompson, D., Luke, E., & Dudley, J. (2014). Solution-Adaptive Method for Prediction of Aerodynamic Interaction in Multiple-Body High-Speed Air-Delivered Systems. SciTech 2014. National Harbor, MD: AIAA. [Abstract]

Blake, J., Thompson, D., Raps, D., & Strobl, T. (2014). Modeling the Freezing of Supercooled Water Droplets Impacting a Cooled Substrate. SciTech 2014. National Harbor, MD: AIAA. [Abstract]

Zhang, L., Machiraju, R., & Thompson, D. (2013). CAVIAR-Based Vortex Core Region Detection. CAD/Graphics 2013. Hong Kong, China. [Abstract]

Alam, M. F., Walters, K., & Thompson, D. (2013). A Transition-Sensitive Hybrid RANS/LES Modeling Methodology for CFD Applications. AIAA 51st Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition. Grapevine, TX. [Abstract]

Alam, M. F., Walters, K., & Thompson, D. (2011). Simulations of Separated Flow around an Airfoil with an Ice Accretion Using Hybrid RANS/LES Models. AIAA 29th Applied Aerodynamics Conference. Honolulu, HI: AIAA, AIAA #2011-3972.

Hutchings, K., Thompson, D., Jung, S., & Raps, D. (2011). Mono-Dispersed Water Droplet Delivery in a Small-Scale Refrigerated Wind Tunnel. AIAA 41st Fluid Dynamics Conference. Honolulu, HI: AIAA, AIAA #2011-3274.

Luke, E., Hebert, S., & Thompson, D. (2008). Theoretical and Practical Evaluation of Solver-Specific Mesh Quality. 46th AIAA Aerospace Sciences Meeting and Exhibit. Reno, NV: AIAA. AIAA #2008-934.

Machiraju, R., Fowler, J. E., Thompson, D., Schroeder, W., & Soni, B. (2000). EVITA: A Prototype System for Efficient Visualization and Interrogation of Terascale Datasets. MSSU-COE-ERC-01-02, Engineering Research Center, Mississippi State University. [Document]

Non-Refereed Conference Posters
Bhushan, S., Salunkhe, S., & Thompson, D. (2017). Validation of Hydrokinetic Turbulent Wake Predictions and Analysis of Wake Recovery Mechanism. All Energy Conference. Glasgow, Scotland, UK.

In-House
King, R., Burgreen, GW, Hammi, Y., Marin, E., Rais-Rohani, M., Rhee, H., Solanki, K.N., Tschopp, M. A., Thompson, D., Wainwright, H. R., Rowe, H. M., Godwin, D., Lassetter, S., & Bean, M. (2011). CAVS 2010 Annual Report. Mississippi State University: Center for Advanced Vehicular Systems. [Document]

Marcum, D., Newman, J., Thompson, D., Blades, E. L., Walters, K., & Hughson, M. (2006). Enhanced Computational Aerodynamic Analysis: Volumes 1 to 4," April 2006, MSSU-BCoE-HPC2-06-04. SimCenter Publication - Contract Report.

Professional Presentations
Weed, R., Luke, E., Janus, M., Thompson, D., Wang, X., & Remotigue, M. (2012). Analysis of Underbody Blast and Blast in Urban Areas Using the MSU Loci/BLAST Code. NDIA Physics Based Modeling in Design and Development for U.S. Defense. Denver, CO: NDIA.